Browsing by Author "Karuri, Hannah"

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    Nematode assemblages, food web indices and metabolic footprints in maize-pigeon pea agro-ecosystems
    (Elsevier Ltd, 2022-08-02) Maina, Samuel; Karuri, Hannah; Mugweru, Julius
    Pigeon pea (Cajanus cajan L.) and maize (Zea mays L.) are important food crops in developing countries due to their multiple benefits. However, their production is constrained by plant-parasitic nematodes (PPN) which cause significant yield losses. Understanding the nematode-based soil food web structure in maize-pigeon pea agroecosystems will allow sustainable PPN management by improving soil health. This study explored nematode community assemblages, indices and metabolic footprints in maize-pigeon pea agroecosystems in Mbeere South, Embu County, Kenya. Soil samples were collected from Gachuriri, Irabari, Kanduu, Kangeta, Kangungi, Kaninwathiga, Karimari and Mutugu regions. The recovered nematodes were identified to the genus level. There were 41 nematode genera across the eight regions. Longidorus spp., Heterocephalobus spp., Cervidellus spp., Mesorhabditis spp. and Mononchus spp. differed significantly across the regions. Meloidogyne spp., Scutellonema spp., Rotylenchulus spp. and Pratylenchus spp. were the most prevalent genera although their abundance was not statistically different across the regions. Using the structure and enrichment indices, soil food web in Irabari was degraded, whereas the other seven regions were structured. The main energy channel of organic matter decomposition in the studied regions was dominated by fungivores. There were no differences in metabolic footprints expect for bacterivore footprint. The occurrence of Hoplolaimus spp. and Xiphinema spp. showed a negative correlation with N, C, Mg and Na. This work provides useful insights into the maize-pigeon pea nematode soil food web structure and function which can be used in improving their yields and soil health
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    Nematode diversity and its association with soil properties in monocrop pigeon pea
    (Elsevier Ltd, 202-07-03) Maina, Samuel; Karuri, Hannah; Mugweru, Julius
    Pigeon pea is a versatile pulse crop grown in semi-arid regions of Kenya; however, its production is affected by plant-parasitic nematodes. The current study was undertaken to investigate the diversity of nematodes and the influence of soil properties on their diversity in monocrop pigeon pea fields in Mbeere North, Embu County, Kenya. Soil samples were collected from Gatunguru B, Gwakaithi, Itururi, Kambungu, Kanyueri, Karigiri, Mbangua and Njarange regions. From each field, soil samples were collected from a depth of 25 cm using W- shaped sampling pattern. The nematodes were identified to the genus level using morphological features. In total, 46 nematode genera assigned to five trophic levels were identified across the eight regions. Abundance of Meloidogyne, Rotylenchulus, Longidorus, Acrobeloides, Cervidellus, Panagrolaimus, Prismatolaimus and Wilsonema varied markedly among the eight regions. Bacterivores belonging to colonizer-persister group 2 were the most prevalent group. There were no differences in Pielou’s evenness, genus richness, Shannon and Simpson diversity indices across the regions. Canonical correspondence analysis indicated significant correlations between certain nematode genera and soil attributes with the first two axes accounting for 56.65% of the variance. Acrobeloides correlated positively with Mg, C, Mn and N, and negatively with Fe. The occurrence of Hoplolaimus and Meso- rhabditis was associated negatively with soil pH, clay and Ca, and positively with sand. The present work reveals a high abundance of economically important PPN in monocrop pigeon pea which necessitates that appropriate nematode management programs are implemented.
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    Response of Selected Kenyan Rice Cultivars to Infection by Root Knot Nematode (Meloidogyne incognita)
    (Springer, 2019-03-22) Nyaga, Justine M.; Namu, John; Alakonya, Amos; Karuri, Hannah; Masanga, Joel; Njeri, Editah
    Meloidogyne incognita causes huge yield losses in rice which is the third most important cereal crop in Kenya. The aim of this study was to identify M. incognita-resistant rice cultivars from Kenya and relate the responses to known resistance pathways with OsPR1a, OsPAL1, and OsJAMYB as marker genes in rice. Five rice cultivars BW 196, Basmati 217 (Pishori), Sindano, IR 2793-80-1 (grown in lowland irrigated fields), and NERICA 4 (grown in upland rainfed fields) were evaluated for resistance to M. incognita under greenhouse conditions in two separate trials. The number of nematode eggs, reproduction factor (RF), and the level of galling were determined. The RF was used to select resistant cultivars. There was a significant difference (P < 0.001) in the number of eggs, galling index, and RF among the cultivars. NERICA 4, BW 196, and Sindano were classified as resistant with an RF <1. There was differential expression of the three marker genes between susceptible and resistant cultivars. OsJAMYB gene was up-regulated in leaves of all rice cultivars after 1 and 3 days post inoculation (dpi). OsPAL1 was up-regulated in leaves of all varieties at 3 dpi while OsPR1a was down-regulated in leaves of resistant plants at 1 dpi and 3 dpi. These results provide an insight on sources of M. incognita resistance in Kenyan rice and it also forms an interesting starting point for further studies on defense responses of common rice varieties to root knot nematode infection.v
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    Vertical Distribution of Plant-Parasitic Nematodes in Sweet Potato
    (Sciendo., 2022) Kemboi, Bernard; Karuri, Hannah; Nyaga, Justine M.; Kingsbury, Aaron J.
    Plant-parasitic nematodes (PPN) are harmful pests that have become a severe threat to crop production worldwide. Diversity of PPN at horizontal and spatial scales influence the effectiveness of control strategies. This study evaluated the vertical distribution of PPN genera at 0 cm to 30 cm and 30 cm to 60 cm in sweet potato fields in Central, Manyatta, and Nembure regions of Embu County, Kenya. A significant region × depth interaction was observed for Tylenchus. For all the other nematode genera, there were no significant variations in the abundance at 0 cm to 30 cm and 30 cm to 60 cm depths. However, Helicotylenchus, Meloidogyne, and Scutellonema occurred in greater numbers at both depths in all regions. Shannon and Simpson diversity indices were higher at 0 cm to 30 cm depth while Pielou’s evenness was similar at both depths in the three regions. Diversity partitioning of genus richness, Shannon, and Simpson diversities across all regions at 0 cm to 30 cm, indicated that β component contributed 61.9%, 35.6%, and 22.6% of γ diversity, respectively. Coinertia analysis indicated a significant covariation between nematode genera and soil properties. The results show that management of PPN in sweet potato fields should be targeted at soil depths that are not less than 60 cm.